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  5. Ore_g19678

Ore_g19678 (FPA)


Aliases : FPA

Description : not classified & original description: none


Gene families : OG0001767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19678

Target Alias Description ECC score Gene Family Method Actions
AT2G43410 FPA RNA binding 0.04 OrthoFinder output from all 47 species
AT4G12640 No alias RNA recognition motif (RRM)-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g089075 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g02600 FPA regulatory protein *(FPA) of TNL-mediated... 0.02 OrthoFinder output from all 47 species
Aob_g25752 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Aspi01Gene50017.t1 FPA, Aspi01Gene50017 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025590 No alias not classified & original description: CDS=415-3153 0.03 OrthoFinder output from all 47 species
Ceric.11G013200.1 FPA, Ceric.11G013200 not classified & original description: pacid=50595357... 0.05 OrthoFinder output from all 47 species
Ceric.17G044800.1 FPA, Ceric.17G044800 not classified & original description: pacid=50618567... 0.04 OrthoFinder output from all 47 species
Dcu_g09580 FPA not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g12725 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20663 FPA not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01010842001 FPA Flowering time control protein FPA OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os09g12730.1 LOC_Os09g12730 Flowering time control protein FPA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os09g34070.1 FPA, LOC_Os09g34070 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g23179 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_61973g0010 No alias Flowering time control protein FPA OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Mp4g06830.1 FPA Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g17152 FPA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10154 FPA regulatory protein *(FPA) of TNL-mediated... 0.04 OrthoFinder output from all 47 species
Pir_g10938 FPA regulatory protein *(FPA) of TNL-mediated... 0.02 OrthoFinder output from all 47 species
Pir_g48313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16656 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Ppi_g11107 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Sam_g02287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18661 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g36021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g053320.4.1 FPA, Solyc06g053320 Flowering time control protein FPA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc12g011050.2.1 Solyc12g011050 Flowering time control protein FPA OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g06752 FPA regulatory protein *(FPA) of TNL-mediated... 0.02 OrthoFinder output from all 47 species
Spa_g54142 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034721_P001 FPA, Zm00001e034721 Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 56 119
IPR000504 RRM_dom 133 197
IPR000504 RRM_dom 283 334
IPR012921 SPOC_C 591 711
No external refs found!