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  5. Ore_g18536

Ore_g18536


Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g18536
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00093740 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
AMTR_s00012p00217710 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.04 OrthoFinder output from all 47 species
Adi_g021088 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.09 OrthoFinder output from all 47 species
Ala_g02487 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Als_g59172 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aob_g23408 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Aop_g00795 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031433 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ceric.09G054000.1 Ceric.09G054000 component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.119 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g13304 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Dde_g50453 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ehy_g01609 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
LOC_Os03g44900.1 LOC_Os03g44900 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.07 OrthoFinder output from all 47 species
Len_g47292 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Lfl_g02194 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
MA_10429335g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Msp_g10519 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Spa_g26106 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Zm00001e005243_P002 Zm00001e005243 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007282 NOT2/3/5_C 793 926
IPR007207 Not_N 4 236
No external refs found!