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  5. Ore_g18526

Ore_g18526


Description : cohesin cofactor *(WAPL) & original description: none


Gene families : OG0002929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g18526

Target Alias Description ECC score Gene Family Method Actions
AT1G11060 No alias WAPL (Wings apart-like protein regulation of... 0.04 OrthoFinder output from all 47 species
Ala_g03756 No alias cohesin cofactor *(WAPL) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10189 No alias cohesin cofactor *(WAPL) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14488 No alias cohesin cofactor *(WAPL) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11536 No alias cohesin cofactor *(WAPL) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0559.g076927 No alias cohesin cofactor *(WAPL) & original description: CDS=93-2768 0.03 OrthoFinder output from all 47 species
Ceric.32G063200.1 Ceric.32G063200 cohesin cofactor *(WAPL) & original description:... 0.02 OrthoFinder output from all 47 species
Cre09.g406500 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g32930 No alias cohesin cofactor *(WAPL) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23094 No alias cohesin cofactor *(WAPL) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_07894 No alias cohesin cofactor (WAPL) 0.03 OrthoFinder output from all 47 species
Mp1g11280.1 No alias cohesin cofactor (WAPL) 0.03 OrthoFinder output from all 47 species
Pir_g11391 No alias cohesin cofactor *(WAPL) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52297 No alias cohesin cofactor *(WAPL) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g38709 No alias cohesin cofactor *(WAPL) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g078560.4.1 Solyc02g078560 cohesin cofactor (WAPL) 0.02 OrthoFinder output from all 47 species
Spa_g09388 No alias cohesin cofactor *(WAPL) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e004474_P004 Zm00001e004474 cohesin cofactor (WAPL) 0.04 OrthoFinder output from all 47 species
Zm00001e012602_P001 Zm00001e012602 cohesin cofactor (WAPL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022771 WAPL_C 156 839
No external refs found!