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  5. Ore_g16905

Ore_g16905 (CHC1)


Aliases : CHC1

Description : SMARCD component *(SWP73) of chromatin remodeling complex & original description: none


Gene families : OG0004548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004548_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16905

Target Alias Description ECC score Gene Family Method Actions
Adi_g040515 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ceric.23G016000.1 CHC1, Ceric.23G016000 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dac_g06588 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g04757 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Gb_09155 CHC1 component BAF60 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
LOC_Os04g31320.1 CHC1, LOC_Os04g31320 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Len_g10118 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
MA_10426077g0010 CHC1 component BAF60 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
MA_277083g0010 CHC1 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Mp4g15340.1 CHC1 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Sam_g19720 No alias SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Smo43289 CHC1 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc02g068100.3.1 CHC1, Solyc02g068100 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 252 285
No external refs found!