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  5. Ore_g16088

Ore_g16088 (DSK2)


Aliases : DSK2

Description : ubiquitin-proteasome shuttle factor *(DSK2) & original description: none


Gene families : OG0001912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16088
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00026840 DSK2,... Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g057053 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.05 OrthoFinder output from all 47 species
Adi_g057054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057055 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Adi_g074699 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Adi_g117315 DSK2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14983 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.06 OrthoFinder output from all 47 species
Als_g44178 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.04 OrthoFinder output from all 47 species
Aob_g05984 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Cba_g25189 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g05609 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01003842001 No alias Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023890001 DSK2 Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01023891001 DSK2 Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_09865 DSK2 autophagic adaptor protein (DSK2) 0.04 OrthoFinder output from all 47 species
MA_39935g0010 DSK2 autophagic adaptor protein (DSK2) 0.04 OrthoFinder output from all 47 species
Mp1g23030.1 DSK2 autophagic adaptor protein (DSK2) 0.02 OrthoFinder output from all 47 species
Pir_g00593 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g13508 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.04 OrthoFinder output from all 47 species
Sam_g23996 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Smo171198 No alias Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc03g032160.3.1 DSK2, Solyc03g032160 autophagic adaptor protein (DSK2) 0.05 OrthoFinder output from all 47 species
Tin_g04101 No alias ubiquiTin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR015940 UBA 504 540
IPR000626 Ubiquitin-like_dom 19 86
No external refs found!