Ore_g16005 (SKIP)

Aliases : SKIP

Description : component *(SKIP/MAC6) of MAC spliceosome-associated complex & original description: none

Gene families : OG0003767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003767_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g16005
Cluster	HCCA: Cluster_171

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00045910	SKIP,...	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Aspi01Gene72638.t1	SKIP, Aspi01Gene72638	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Ceric.15G032900.1	SKIP, Ceric.15G032900	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.04	OrthoFinder output from all 47 species
Cre01.g051100	SKIP	RNA processing.RNA splicing.spliceosome-associated...	0.04	OrthoFinder output from all 47 species
GSVIVT01015321001	SKIP	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
LOC_Os02g52250.1	SKIP, LOC_Os02g52250	component SKIP/MAC6 of non-snRNP MOS4-associated complex	0.02	OrthoFinder output from all 47 species
MA_70500g0010	SKIP	component SKIP/MAC6 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Mp5g03870.1	SKIP	component SKIP/MAC6 of non-snRNP MOS4-associated complex	0.02	OrthoFinder output from all 47 species
Nbi_g07685	SKIP	component *(SKIP/MAC6) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Solyc12g008370.3.1	SKIP, Solyc12g008370	component SKIP/MAC6 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004015	SKI-int_prot_SKIP_SNW-dom	181	339

External Links

No external refs found!