Ore_g15868 (PUB23)

Aliases : PUB23

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g15868
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00130440	CMPG2, ATCMPG2,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT3G02840	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Aev_g02169	PUB23	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18167	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06990	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g20026	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g10929	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene15171.t1	PUB29, ATPUB29,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene22942.t1	PUB26, Aspi01Gene22942	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51615.t1	PUB15, Aspi01Gene51615	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g27489	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.10G007700.1	PUB23, Ceric.10G007700	not classified & original description: pacid=50612519...	0.04	OrthoFinder output from all 47 species
Dac_g01592	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g46168	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g39747	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03660	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g11880	CMPG1, ATCMPG1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g16356	PUB22	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01011139001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01011140001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01011616001	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_02635	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os01g57735.1	LOC_Os01g57735	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os02g33680.1	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10425865g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_8837995g0010	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp3g11730.1	PUB25	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Ore_g10378	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g12799	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g04507	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014903	PUB26	not classified & original description: CDS=1-1419	0.05	OrthoFinder output from all 47 species
Solyc01g007000.4.1	PUB22, Solyc01g007000	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc01g007020.4.1	PUB23, Solyc01g007020	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007030.3.1	PUB22, Solyc01g007030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g007040.4.1	PUB22, Solyc01g007040	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc05g056500.1.1	PUB26, Solyc05g056500	U-box domain-containing protein 26 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc06g074140.1.1	PUB24, Solyc06g074140	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g068920.1.1	PUB23, Solyc11g068920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g03410	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g08841	PUB25	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g16409	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	79

External Links

No external refs found!

Ore_g15868 (PUB23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation