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  5. Ore_g15339

Ore_g15339


Description : not classified & original description: none


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g15339

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G16940 No alias Splicing factor, CC1-like 0.05 OrthoFinder output from all 47 species
AT5G09880 No alias Splicing factor, CC1-like 0.02 OrthoFinder output from all 47 species
Adi_g075755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117075 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g41657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.04 OrthoFinder output from all 47 species
Dac_g05708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022281001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
GSVIVT01023998001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_39308 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g30370.1 LOC_Os10g30370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g58331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g34973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g19710.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g11719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009589 No alias not classified & original description: CDS=346-2226 0.03 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004710_P005 Zm00001e004710 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 418 534
IPR000504 RRM_dom 234 291
IPR000504 RRM_dom 327 397
IPR000504 RRM_dom 540 592
No external refs found!