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  5. Ore_g13016

Ore_g13016


Description : not classified & original description: none


Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g13016
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.02 OrthoFinder output from all 47 species
AT5G13730 SIGD, SIG4 sigma factor 4 0.04 OrthoFinder output from all 47 species
Adi_g013131 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g022157 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aev_g03981 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g08338 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g12116 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g20576 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g61402 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Aob_g16433 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g04446 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g04543 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g10475 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.02G009200.1 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.02G083900.1 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g04026 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07794 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g12113 ATSIG1, SIGB,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os08g14450.1 SIGF, SIG6,... basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species
Mp7g15030.1 SIGB, SIG2,... basal transcription factor (Sigma) 0.02 OrthoFinder output from all 47 species
Sam_g19255 No alias basal Sigma-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sam_g38609 No alias basal Sigma-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Solyc08g065970.3.1 SIGC, SIG3,... basal transcription factor (Sigma) 0.04 OrthoFinder output from all 47 species
Solyc09g008040.3.1 SIGF, SIG6,... basal transcription factor (Sigma) 0.02 OrthoFinder output from all 47 species
Spa_g13112 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e011616_P008 SIGF, SIG6,... basal transcription factor (Sigma) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!