Ore_g10938


Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g10938

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00040540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT3G07110 No alias Ribosomal protein L13 family protein 0.04 OrthoFinder output from all 47 species
AT3G24830 No alias Ribosomal protein L13 family protein 0.09 OrthoFinder output from all 47 species
AT4G13170 No alias Ribosomal protein L13 family protein 0.05 OrthoFinder output from all 47 species
AT5G48760 No alias Ribosomal protein L13 family protein 0.05 OrthoFinder output from all 47 species
Adi_g108658 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g124594 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g00711 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g12384 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g06902 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g15634 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g22675 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0075.g037721 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0272.g061284 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g09451 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.20G024700.1 Ceric.20G024700 component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.29 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g00316 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g06037 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g34535 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01028661001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os03g54890.1 LOC_Os03g54890 component RPL13a of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os07g01870.1 LOC_Os07g01870 component RPL13a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Len_g10030 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g21734 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g06781 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Msp_g27149 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g04609 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g01822 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c11_17280V3.1 Pp3c11_17280 Ribosomal protein L13 family protein 0.02 OrthoFinder output from all 47 species
Pp3c19_10330V3.1 Pp3c19_10330 Ribosomal protein L13 family protein 0.04 OrthoFinder output from all 47 species
Pp3c1_15830V3.1 Pp3c1_15830 Ribosomal protein L13 family protein 0.05 OrthoFinder output from all 47 species
Pp3c2_20550V3.1 Pp3c2_20550 Ribosomal protein L13 family protein 0.1 OrthoFinder output from all 47 species
Ppi_g25366 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g25630 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05746 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g07579 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31286 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo166650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Solyc05g053670.3.1 Solyc05g053670 component RPL13a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Solyc09g091740.4.1 Solyc09g091740 component RPL13a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g10532 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g15627 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g15628 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g22049 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g44762 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g00453 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Zm00001e005719_P002 Zm00001e005719 component RPL13a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e012017_P002 Zm00001e012017 component RPL13a of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 115
No external refs found!