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  5. Ore_g10272

Ore_g10272


Description : RNA helicase *(RCF1) & original description: none


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g10272

Target Alias Description ECC score Gene Family Method Actions
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Ala_g15868 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28448 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03604 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01686.t1 Aspi01Gene01686 RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.06 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dcu_g06489 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09244 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_03798 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Len_g49748 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16955 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Pir_g11401 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.04 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 572 743
IPR001650 Helicase_C 781 889
No external refs found!