Ore_g09232

Description : component *(SRP72) of SRP (signal recognition particle) complex & original description: none

Gene families : OG0006069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006069_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g09232
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AT1G67680	No alias	SRP72 RNA-binding domain	0.05	OrthoFinder output from all 47 species
Als_g32420	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Aob_g18346	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Ceric.1Z034700.1	Ceric.1Z034700	component *(SRP72) of SRP (signal recognition particle)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.181	No alias	Protein translocation.endoplasmic...	0.03	OrthoFinder output from all 47 species
Cre03.g182500	No alias	Protein translocation.endoplasmic...	0.02	OrthoFinder output from all 47 species
Dac_g09929	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
GSVIVT01010320001	No alias	Protein translocation.endoplasmic...	0.05	OrthoFinder output from all 47 species
Lfl_g11159	No alias	component *(SRP72) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Mp3g01460.1	No alias	component SRP72 of SRP (signal recognition particle) complex	0.03	OrthoFinder output from all 47 species
Smo166386	No alias	Protein translocation.endoplasmic...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031545	SRP_TPR-like	55	177
IPR013699	Signal_recog_part_SRP72_RNA-bd	572	629

External Links

No external refs found!

Ore_g09232

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation