1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g08626

Ore_g08626 (SIZ1, ATSIZ1)


Aliases : SIZ1, ATSIZ1

Description : E3 SUMO ubiquitin ligase *(SIZ1) & original description: none


Gene families : OG0002076 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g08626

Target Alias Description ECC score Gene Family Method Actions
Adi_g057778 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06146 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09606 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07333 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16402 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22826 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07734 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25763.t1 SIZ1, ATSIZ1,... E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25764.t1 SIZ1, ATSIZ1,... E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Cre12.g500900 SIZ1, ATSIZ1 Protein degradation.peptide... 0.02 OrthoFinder output from all 47 species
GSVIVT01025151001 SIZ1, ATSIZ1 Protein degradation.peptide... 0.04 OrthoFinder output from all 47 species
Gb_29862 SIZ1, ATSIZ1 SUMO E3 ligase (SIZ1) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50980.1 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.05 OrthoFinder output from all 47 species
LOC_Os05g03430.1 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.04 OrthoFinder output from all 47 species
Len_g03393 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02303 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13950 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Mp6g08590.1 SIZ1, ATSIZ1 SUMO E3 ligase (SIZ1) 0.05 OrthoFinder output from all 47 species
Msp_g31450 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13120 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10324 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24449 No alias E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g069160.3.1 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.05 OrthoFinder output from all 47 species
Spa_g12397 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e027582_P001 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 119 171
IPR004181 Znf_MIZ 364 412
No external refs found!