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  5. Ore_g08278

Ore_g08278 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g08278

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265290 PTB1, PTB,... RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Adi_g056332 PTB1, PTB, ATPTB1 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.21 No alias Polypyrimidine tract-binding protein homolog 3... 0.02 OrthoFinder output from all 47 species
Gb_09196 PTB2, ATPTB2 PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.06 OrthoFinder output from all 47 species
MA_10431256g0010 PTB1, PTB, ATPTB1 PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Nbi_g14244 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17556 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013166 PTB1, PTB, ATPTB1 not classified & original description: CDS=1-306 0.04 OrthoFinder output from all 47 species
Solyc02g088110.4.1 PTB1, PTB,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
Tin_g04014 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019107 myristoyltransferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR021790 PTBP1-like_RRM2 237 315
IPR000504 RRM_dom 17 67
No external refs found!