Ore_g07771


Description : component *(uL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001493_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g07771

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00131950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AMTR_s00048p00062300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G33120 No alias Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
AT1G33140 PGY2 Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
AT4G10450 No alias Ribosomal protein L6 family 0.03 OrthoFinder output from all 47 species
Adi_g042780 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g08837 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g62254 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g00197 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g011131 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g10828 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.1Z004300.1 Ceric.1Z004300 component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Dac_g00432 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g08736 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os09g31180.1 LOC_Os09g31180 component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Lfl_g20813 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Pp3c14_8600V3.1 Pp3c14_8600 Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
Pp3c16_20070V3.1 Pp3c16_20070 Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
Sam_g05554 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g11980 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g12948 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc06g073310.3.1 Solyc06g073310 component RPL9 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Solyc08g014550.3.1 Solyc08g014550 component RPL9 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc12g096700.2.1 Solyc12g096700 component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g22811 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g24089 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e025404_P001 Zm00001e025404 component RPL9 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e029810_P003 Zm00001e029810 component RPL9 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e036699_P002 Zm00001e036699 component RPL9 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 99 177
No external refs found!