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  5. Ore_g07740

Ore_g07740


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g07740

Target Alias Description ECC score Gene Family Method Actions
AT3G06410 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 OrthoFinder output from all 47 species
Adi_g017416 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Adi_g075180 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Als_g59230 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g01939 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene59536.t1 Aspi01Gene59536 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Cba_g06425 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Dac_g31557 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ppi_g12708 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g01856 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Tin_g05215 ZFN3 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g16528 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Zm00001e028479_P001 ZFN1, Zm00001e028479 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 103 128
IPR000571 Znf_CCCH 311 335
IPR000571 Znf_CCCH 271 292
IPR000571 Znf_CCCH 59 82
IPR000571 Znf_CCCH 13 38
No external refs found!