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  5. Ore_g06586

Ore_g06586


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g06586
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AT3G32940 No alias RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
AT5G51300 No alias splicing factor-related 0.04 OrthoFinder output from all 47 species
Adi_g057109 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07951 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14038 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07393 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11258 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60850.t1 Aspi01Gene60850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01316 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G107100.1 Ceric.01G107100 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.25G061400.1 Ceric.25G061400 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Cre12.g553750 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g09594 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04018 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16716 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30248 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Len_g07206 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54499 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04206 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04920 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426554g0020 No alias pre-mRNA splicing factor (SF1) 0.06 OrthoFinder output from all 47 species
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.05 OrthoFinder output from all 47 species
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.05 OrthoFinder output from all 47 species
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Msp_g15293 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15402 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18845 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04834 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g31857 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g60982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11449 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55171 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09720 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g18592 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g18658 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27159 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26555 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54052 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09957 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11604 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45333 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008383_P001 Zm00001e008383 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Zm00001e040741_P001 Zm00001e040741 pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032570 SF1-HH 316 428
IPR004088 KH_dom_type_1 447 478
IPR000504 RRM_dom 685 733
No external refs found!