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  5. Ore_g06583

Ore_g06583 (ATCPSF160, CPSF160)


Aliases : ATCPSF160, CPSF160

Description : component *(CPSF160/Yhh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g06583

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 ATCPSF160,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.04 OrthoFinder output from all 47 species
Ala_g19211 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Als_g01205 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Aop_g06976 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aspi01Gene55703.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55705.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038419 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.05G035200.1 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Cre13.g573450 ATCPSF160, CPSF160 Probable cleavage and polyadenylation specificity factor... 0.02 OrthoFinder output from all 47 species
Dcu_g19520 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
LOC_Os04g18010.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Len_g23442 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
MA_10435523g0020 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
MA_169369g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.05 OrthoFinder output from all 47 species
MA_9146756g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.02 OrthoFinder output from all 47 species
Mp2g06280.1 ATCPSF160, CPSF160 component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Msp_g15040 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Nbi_g12582 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g22242 ATCPSF160, CPSF160 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g11948 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Smo82277 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
Solyc03g007100.3.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Spa_g06166 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Tin_g41718 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Zm00001e008515_P003 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 470 792
No external refs found!