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  5. Ore_g06037

Ore_g06037


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g06037
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Adi_g088324 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g61453 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000501 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0091.g042854 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.13G096200.1 Ceric.13G096200 not classified & original description: pacid=50636733... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01030295001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Gb_18550 No alias component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os01g25610.1 LOC_Os01g25610 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Sam_g13009 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27350 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g38267 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc02g070330.4.1 Solyc02g070330 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc02g070340.3.1 Solyc02g070340 component RPS4 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc06g007360.3.1 Solyc06g007360 component RPS4 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g17898 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006307_P001 Zm00001e006307 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e011676_P001 Zm00001e011676 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR002942 S4_RNA-bd 43 90
IPR013843 Ribosomal_S4e_N 3 39
IPR005824 KOW 178 210
IPR032277 40S_S4_C 212 258
No external refs found!