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  5. Ppi_g63485

Ppi_g63485


Description : primase component *(POLA3) of DNA polymerase alpha complex & original description: none


Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g63485

Target Alias Description ECC score Gene Family Method Actions
AT1G67320 No alias DNA primase, large subunit family 0.03 OrthoFinder output from all 47 species
Als_g00918 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059810 No alias primase component *(POLA3) of DNA polymerase alpha... 0.05 OrthoFinder output from all 47 species
Ceric.22G004000.1 Ceric.22G004000 primase component *(POLA3) of DNA polymerase alpha... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.68 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Cre06.g293000 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Dac_g13828 No alias primase component *(POLA3) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Dcu_g14762 No alias primase component *(POLA3) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
GSVIVT01029087001 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Gb_25310 No alias Probable DNA primase large subunit OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Gb_25312 No alias primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
LOC_Os07g22400.2 LOC_Os07g22400 primase component POLA3 of DNA polymerase alpha complex 0.03 OrthoFinder output from all 47 species
MA_99205g0020 No alias primase component POLA3 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species
Mp7g17480.1 No alias primase component POLA3 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
Msp_g07837 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210 No alias primase component *(POLA3) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Solyc04g045530.4.1 Solyc04g045530 primase component POLA3 of DNA polymerase alpha complex 0.02 OrthoFinder output from all 47 species
Spa_g08160 No alias primase component *(POLA3) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Tin_g10410 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Zm00001e039405_P003 Zm00001e039405 primase component POLA3 of DNA polymerase alpha complex 0.01 OrthoFinder output from all 47 species
Zm00001e040751_P005 Zm00001e040751 primase component POLA3 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007238 DNA_primase_lsu_euk/arc 173 438
No external refs found!