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  5. Ppi_g59335

Ppi_g59335


Description : not classified & original description: none


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g59335

Target Alias Description ECC score Gene Family Method Actions
Aev_g14343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13001 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g14510 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene71775.t1 Aspi01Gene71775 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71777.t1 Aspi01Gene71777 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015637 No alias not classified & original description: CDS=1-2424 0.05 OrthoFinder output from all 47 species
Ceric.09G038600.1 Ceric.09G038600 not classified & original description: pacid=50586912... 0.04 OrthoFinder output from all 47 species
Dcu_g13828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g27091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11999 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 428 536
IPR011545 DEAD/DEAH_box_helicase_dom 220 390
No external refs found!