1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g29650.1

LOC_Os12g29650.1


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 166.0)


Gene families : OG_01_0000139 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000139_tree ,
OG_02_0000052 (LandPlants) Phylogenetic Tree(s): OG_02_0000052_tree ,
OG_03_0000062 (SeedPlants) Phylogenetic Tree(s): OG_03_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g29650.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT5G22560 No alias Plant protein of unknown function (DUF247) 0.02 Archaeplastida
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_41270 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os11g33430.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
MA_120599g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g057260.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e011184_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023471_P002 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 LandPlants
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 LandPlants
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.02 LandPlants
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 LandPlants
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.03 LandPlants
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.02 LandPlants
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.04 LandPlants
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.03 LandPlants
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 LandPlants
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.02 LandPlants
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.09 LandPlants
GSVIVT01033580001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.06 LandPlants
Gb_41270 No alias no hits & (original description: none) 0.03 LandPlants
LOC_Os11g33430.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 LandPlants
LOC_Os11g33950.1 No alias no hits & (original description: none) 0.03 LandPlants
Solyc01g057260.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 LandPlants
Solyc09g009230.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 LandPlants
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 LandPlants
Zm00001e011184_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e023471_P002 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 LandPlants
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 LandPlants
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 SeedPlants
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 SeedPlants
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 SeedPlants
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.02 SeedPlants
AMTR_s00023p00162490 evm_27.TU.AmTr_v1... No description available 0.02 SeedPlants
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.02 SeedPlants
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 SeedPlants
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 SeedPlants
Gb_36111 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.01 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004158 DUF247_pln 44 440
No external refs found!