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  5. Ppi_g57163

Ppi_g57163 (MSH6-1, ATMSH6, MSH6)


Aliases : MSH6-1, ATMSH6, MSH6

Description : component *(MSH6) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g57163

Target Alias Description ECC score Gene Family Method Actions
Adi_g014384 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Msp_g15076 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Spa_g07627 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 528 691
IPR007696 DNA_mismatch_repair_MutS_core 747 1062
IPR000432 DNA_mismatch_repair_MutS_C 1123 1312
IPR007695 DNA_mismatch_repair_MutS-lik_N 404 517
IPR007861 DNA_mismatch_repair_MutS_clamp 932 1022
No external refs found!