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  5. Ppi_g56168

Ppi_g56168 (ATIWS1, IWS1)


Aliases : ATIWS1, IWS1

Description : component *(IWS1) of SPT6-IWS1 transcription elongation complex & original description: none


Gene families : OG0004677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g56168

Target Alias Description ECC score Gene Family Method Actions
Aev_g06016 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05420.1 ATIWS1, IWS1,... component IWS1 of SPT6-IWS1 transcription elongation complex 0.02 OrthoFinder output from all 47 species
Nbi_g05782 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Pir_g10256 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Solyc06g066320.3.1 ATIWS1, IWS1,... component IWS1 of SPT6-IWS1 transcription elongation complex 0.02 OrthoFinder output from all 47 species
Spa_g48259 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 331 371
No external refs found!