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  5. Ppi_g52670

Ppi_g52670 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g52670

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 UPF1, ATUPF1,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.04 OrthoFinder output from all 47 species
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.08 OrthoFinder output from all 47 species
Adi_g042703 UPF1, ATUPF1, LBA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055495 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aev_g08220 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29734 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Ala_g16050 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Ala_g33995 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15234 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Als_g22322 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Aob_g17076 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aop_g14327 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene01492.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28242.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0128.g048821 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Cba_g31771 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Cba_g36240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G063700.1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Cre02.g092500 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 OrthoFinder output from all 47 species
Dac_g10431 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Dac_g21455 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11492 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.1 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.11 OrthoFinder output from all 47 species
Dde_g51663 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Ehy_g19605 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Ehy_g22041 UPF1, ATUPF1, LBA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013247001 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.08 OrthoFinder output from all 47 species
Gb_22830 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
LOC_Os07g31340.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 OrthoFinder output from all 47 species
Len_g20629 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Lfl_g04285 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
MA_10326503g0010 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
MA_10436671g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.05 OrthoFinder output from all 47 species
Mp1g01200.1 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.06 OrthoFinder output from all 47 species
Msp_g13210 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Nbi_g13849 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Pir_g11844 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Sam_g25380 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Sam_g25381 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Sam_g29675 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Solyc08g007110.4.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Solyc08g077420.3.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.07 OrthoFinder output from all 47 species
Spa_g48749 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Spa_g48750 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Tin_g07774 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 741 936
IPR018999 UPF1_CH/ZBD 180 331
IPR041677 DNA2/NAM7_AAA_11 634 731
IPR006935 Helicase/UvrB_N 530 596
IPR040812 UPF1_1B_dom 383 472
No external refs found!