1. Home
  2. Species
  3. Pyrrosia piloselloides
  4. Sequence
  5. Ppi_g49222

Ppi_g49222


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer & original description: none


Gene families : OG0001881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001881_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g49222
Cluster HCCA: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
AT3G15120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g117179 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Aob_g33764 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Ceric.34G067200.1 Ceric.34G067200 component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.02 OrthoFinder output from all 47 species
LOC_Os01g47800.1 LOC_Os01g47800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g11424 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
MA_10425878g0020 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
MA_10432357g0010 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
Mp1g06470.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.02 OrthoFinder output from all 47 species
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 OrthoFinder output from all 47 species
Ore_g33221 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023552 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Smo170139 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
Solyc07g062770.2.1 Solyc07g062770 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species
Spa_g26513 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 695 830
No external refs found!