Ppi_g44472 (NUA, AtTPR)

Aliases : NUA, AtTPR

Description : nucleoporin of nuclear pore complex *(NUA) & original description: none

Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g44472

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00124730	NUA, AtTPR,...	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
AT1G79280	NUA, AtTPR	nuclear pore anchor	0.05	OrthoFinder output from all 47 species
Adi_g055513	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.09	OrthoFinder output from all 47 species
Aev_g02612	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
Ala_g07174	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.07	OrthoFinder output from all 47 species
Als_g57232	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Aob_g26121	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Aop_g09061	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
Aspi01Gene40432.t1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Cba_g33695	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.23G046200.1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000404.46	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
Dac_g14678	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g03218	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
Ehy_g15153	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01036698001	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.1	OrthoFinder output from all 47 species
Gb_36757	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.08	OrthoFinder output from all 47 species
LOC_Os02g50799.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.05	OrthoFinder output from all 47 species
Len_g13910	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g03520	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.08	OrthoFinder output from all 47 species
MA_10287420g0010	NUA, AtTPR	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_10435343g0040	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
MA_109011g0010	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
MA_113769g0010	NUA, AtTPR	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_33097g0010	NUA, AtTPR	Nuclear-pore anchor OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_929786g0010	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
Mp2g14600.1	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
Msp_g15712	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Ore_g18802	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Pir_g20507	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009910	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Sam_g18065	No alias	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Smo444132	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Solyc06g053570.2.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.06	OrthoFinder output from all 47 species
Spa_g10543	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
Zm00001e023916_P004	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006606	protein import into nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006359	regulation of transcription by RNA polymerase III	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016480	negative regulation of transcription by RNA polymerase III	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1065	1187

External Links

No external refs found!

Ppi_g44472 (NUA, AtTPR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation