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  5. LOC_Os12g03450.1

LOC_Os12g03450.1


Description : Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana (sp|a8mqa3|pp330_arath : 397.0)


Gene families : OG_01_0024156 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0018853 (LandPlants) Phylogenetic Tree(s): OG_02_0018853_tree ,
OG_03_0018399 (SeedPlants) Phylogenetic Tree(s): OG_03_0018399_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03450.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018056001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
GSVIVT01018056001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 LandPlants
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.02 LandPlants
GSVIVT01018056001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 SeedPlants
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 471 595
IPR002885 Pentatricopeptide_repeat 404 430
IPR002885 Pentatricopeptide_repeat 335 361
IPR002885 Pentatricopeptide_repeat 446 467
IPR002885 Pentatricopeptide_repeat 301 330
IPR002885 Pentatricopeptide_repeat 372 397
No external refs found!