Ppi_g42839 (ATSIG5, SIG5, SIGE)

Aliases : ATSIG5, SIG5, SIGE

Description : basal Sigma-type transcription factor & original description: none

Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g42839
Cluster	HCCA: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00015p00252960	ATSIG5, SIG5,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00015p00253000	ATSIG5, SIG5,...	RNA polymerase sigma factor sigE,...	0.02	OrthoFinder output from all 47 species
Adi_g115799	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g03916	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ala_g08597	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Als_g20817	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Aop_g08605	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene21613.t1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G065100.1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ehy_g01372	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Gb_40730	ATSIG5, SIG5, SIGE	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
LOC_Os05g50930.1	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.06	OrthoFinder output from all 47 species
Len_g00665	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Lfl_g17419	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g47380	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Pir_g19480	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Smo147096	ATSIG5, SIG5, SIGE	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Solyc03g007370.3.1	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Tin_g20273	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Zm00001e032596_P002	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	323	392
IPR007630	RNA_pol_sigma70_r4	506	559

External Links

No external refs found!

Ppi_g42839 (ATSIG5, SIG5, SIGE)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation