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  5. Ppi_g41947

Ppi_g41947 (MED34, ATRECQ2, RECQL2)


Aliases : MED34, ATRECQ2, RECQL2

Description : component *(MED34) of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g41947

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00083990 RECQI1,... ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G31360 MED34, ATRECQ2, RECQL2 RECQ helicase L2 0.02 OrthoFinder output from all 47 species
Adi_g085938 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055698 RecQl3, ATRECQ3 not classified & original description: CDS=1-1707 0.02 OrthoFinder output from all 47 species
Ceric.17G060200.1 ATRECQ4A,... helicase component *(RecQ4A) of RTR Holliday junction... 0.05 OrthoFinder output from all 47 species
Dde_g43590 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
GSVIVT01036944001 MED34, ATRECQ2, RECQL2 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
LOC_Os04g35420.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
LOC_Os11g48090.5 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Mp4g16510.1 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14824 RecQl3, ATRECQ3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50849 No alias component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Solyc01g103960.3.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032284 RecQ_Zn-bd 443 498
IPR018982 RQC_domain 505 616
IPR002121 HRDC_dom 635 697
IPR001650 Helicase_C 325 430
IPR011545 DEAD/DEAH_box_helicase_dom 116 282
No external refs found!