Ppi_g41946 (CHA18, CHR18)

Aliases : CHA18, CHR18

Description : chromatin remodeling factor *(SMARCAL1) & original description: none

Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g41946

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Adi_g021948	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Ceric.09G005400.1	CHA18, CHR18,...	chromatin remodeling factor *(SMARCAL1) & original...	0.04	OrthoFinder output from all 47 species
Dde_g00939	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g21123	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Gb_30392	No alias	chromatin remodeling factor (SMARCAL1)	0.03	OrthoFinder output from all 47 species
LOC_Os07g40730.1	LOC_Os07g40730	chromatin remodeling factor (SMARCAL1)	0.02	OrthoFinder output from all 47 species
Lfl_g02206	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Mp1g02820.1	CHA18, CHR18	chromatin remodeling factor (SMARCAL1)	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0191.g025303	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Sam_g11647	No alias	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e035658_P002	CHA18, CHR18,...	chromatin remodeling factor (SMARCAL1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	431	684
IPR001650	Helicase_C	724	823

External Links

No external refs found!

Ppi_g41946 (CHA18, CHR18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation