Ppi_g32958

Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex & original description: none

Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g32958

Target	Alias	Description	ECC score	Gene Family Method
Aev_g01540	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Aob_g12480	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.2	No alias	DExH-box ATP-dependent RNA helicase DExH11...	0.02	OrthoFinder output from all 47 species
Msp_g19222	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.04	OrthoFinder output from all 47 species
Nbi_g03153	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Pnu_g16077	HEN2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0264.g026935	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species
Sam_g10573	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Tin_g21647	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	336	441
IPR025696	rRNA_proc-arch_dom	495	773
IPR011545	DEAD/DEAH_box_helicase_dom	52	198
IPR012961	Ski2/MTR4_C	800	957

External Links

No external refs found!