Ppi_g32199

Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g32199

Target	Alias	Description	ECC score	Gene Family Method
AT1G15280	No alias	CASC3/Barentsz eIF4AIII binding	0.04	OrthoFinder output from all 47 species
Aspi01Gene44752.t2	Aspi01Gene44752	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dcu_g14577	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Lfl_g07367	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Mp8g03760.1	No alias	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Pnu_g31460	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g27144	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Solyc12g042990.3.1	Solyc12g042990	component CASC3 of RNA quality control Exon Junction complex	0.05	OrthoFinder output from all 47 species
Zm00001e020605_P001	Zm00001e020605	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Zm00001e027475_P001	Zm00001e027475	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0035145	exon-exon junction complex	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018545	Btz_dom	142	206

External Links

No external refs found!