Ppi_g30682

Description : mTERF-type transcription factor & original description: none

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g30682

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00024p00246250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s02857p00005060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.01	OrthoFinder output from all 47 species
AT1G61970	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g110583	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g17726	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g26943	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene09179.t1	Aspi01Gene09179	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene64008.t1	Aspi01Gene64008	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10960	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47103	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06040	EMB2219	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009012001	No alias	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
GSVIVT01010970001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
GSVIVT01036787001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
LOC_Os05g33440.1	LOC_Os05g33440	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g34160.1	LOC_Os05g34160	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g12070.1	LOC_Os06g12070	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os11g14130.1	LOC_Os11g14130	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Len_g24851	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g35819	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08103	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_113465g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_3151g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_493420g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Nbi_g10336	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g18127	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17587	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35894	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g33567	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g07339	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g09613	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015528	No alias	mTERF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g18975	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g072500.1.1	Solyc04g072500	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Spa_g12187	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	HCCA
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	144	336
IPR003690	MTERF	349	451

External Links

No external refs found!

Ppi_g30682

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation