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  5. Ppi_g30411

Ppi_g30411


Description : SMARCF component *(LFR) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0003554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003554_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g30411
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Adi_g013022 No alias transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aev_g17045 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.23G031600.1 Ceric.23G031600 SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dcu_g43192 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01023250001 No alias No description available 0.04 OrthoFinder output from all 47 species
Lfl_g03435 No alias transcriptional co-activator *(BET/GTE) & original... 0.06 OrthoFinder output from all 47 species
MA_293157g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Sam_g27723 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Spa_g06511 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Tin_g05180 No alias SMARCF component *(LFR) of SWI/SNF chromaTin remodeling... 0.04 OrthoFinder output from all 47 species
Zm00001e021878_P001 Zm00001e021878 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 196 276
No external refs found!