Ppi_g29284

Description : heavy chain of clathrin triskelion & original description: none

Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g29284

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00168430	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
AT3G11130	No alias	Clathrin, heavy chain	0.07	OrthoFinder output from all 47 species
Adi_g011980	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g12409	No alias	heavy chain of clathrin triskelion & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g02408	No alias	heavy chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0078.g038251	No alias	heavy chain of clathrin triskelion & original...	0.05	OrthoFinder output from all 47 species
Cba_g27949	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g27951	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.06G067200.1	Ceric.06G067200	heavy chain of clathrin triskelion & original...	0.06	OrthoFinder output from all 47 species
Ceric.1Z011000.1	Ceric.1Z011000	heavy chain of clathrin triskelion & original...	0.05	OrthoFinder output from all 47 species
Dcu_g02059	No alias	heavy chain of clathrin triskelion & original description: none	0.06	OrthoFinder output from all 47 species
GSVIVT01024708001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.05	OrthoFinder output from all 47 species
GSVIVT01032792001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Gb_33028	No alias	heavy chain of clathrin triskelion	0.04	OrthoFinder output from all 47 species
Gb_33029	No alias	Clathrin heavy chain 2 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os11g01380.1	LOC_Os11g01380	heavy chain of clathrin triskelion	0.04	OrthoFinder output from all 47 species
LOC_Os12g01390.1	LOC_Os12g01390	heavy chain of clathrin triskelion	0.04	OrthoFinder output from all 47 species
Len_g11569	No alias	heavy chain of clathrin triskelion & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g03514	No alias	heavy chain of clathrin triskelion & original description: none	0.05	OrthoFinder output from all 47 species
MA_528g0010	No alias	Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
MA_641648g0010	No alias	Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
Mp6g19660.1	No alias	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Msp_g26122	No alias	heavy chain of clathrin triskelion & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g03873	No alias	heavy chain of clathrin triskelion & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g13635	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002555	No alias	heavy chain of clathrin triskelion & original...	0.03	OrthoFinder output from all 47 species
Sam_g11622	No alias	heavy chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Smo149750	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Solyc03g096000.3.1	Solyc03g096000	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Solyc05g052510.4.1	Solyc05g052510	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Solyc06g051310.3.1	Solyc06g051310	heavy chain of clathrin triskelion	0.07	OrthoFinder output from all 47 species
Spa_g09457	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g17793	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e009296_P003	Zm00001e009296	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Zm00001e020822_P001	Zm00001e020822	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Zm00001e023940_P002	Zm00001e023940	heavy chain of clathrin triskelion	0.05	OrthoFinder output from all 47 species
Zm00001e039167_P001	Zm00001e039167	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004788	thiamine diphosphokinase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022365	Clathrin_H-chain_propeller_rpt	156	197
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR000547	Clathrin_H-chain/VPS_repeat	1292	1431
IPR000547	Clathrin_H-chain/VPS_repeat	993	1133
IPR000547	Clathrin_H-chain/VPS_repeat	557	692
IPR000547	Clathrin_H-chain/VPS_repeat	1144	1281
IPR000547	Clathrin_H-chain/VPS_repeat	701	839
IPR000547	Clathrin_H-chain/VPS_repeat	850	975
IPR015348	Clathrin_H-chain_linker_core	344	367

External Links

No external refs found!

Ppi_g29284

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation