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  5. Ppi_g18401

Ppi_g18401 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18401

Target Alias Description ECC score Gene Family Method Actions
Aev_g05804 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cre03.g164950 RNPS1, SR45 RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Dcu_g05318 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Gb_14226 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g72890.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g10775 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pnu_g12858 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019602 RNPS1, SR45 not classified & original description: CDS=110-1036 0.02 OrthoFinder output from all 47 species
Sam_g26477 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36997 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 96 164
No external refs found!