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  5. Ppi_g17469

Ppi_g17469


Description : not classified & original description: none


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g17469

Target Alias Description ECC score Gene Family Method Actions
AT5G05140 No alias Transcription elongation factor (TFIIS) family protein 0.02 OrthoFinder output from all 47 species
Adi_g012315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012316 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Adi_g021758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g076735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113666 No alias component *(MED26) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Ala_g01712 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Als_g05969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15707 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Cba_g32236 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Cba_g37242 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Cba_g69237 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ceric.15G055300.1 Ceric.15G055300 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.22G058100.1 Ceric.22G058100 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g19305 No alias component *(MED26) of MEDIATOR transcription... 0.07 OrthoFinder output from all 47 species
Dcu_g48948 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ehy_g18808 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
GSVIVT01019798001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01025776001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Len_g23062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g31661 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
MA_83257g0010 No alias component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Msp_g13784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07133 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011548 No alias not classified & original description: CDS=1-762 0.02 OrthoFinder output from all 47 species
Sam_g13021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29561 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Smo404483 No alias Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species
Solyc10g078350.2.1 Solyc10g078350 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Solyc10g080930.2.1 Solyc10g080930 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Tin_g09980 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 173 222
No external refs found!