Ppi_g16685 (SHI)


Aliases : SHI

Description : SRS-type transcription factor & original description: none


Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16685
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00161200 LRP1,... RNA biosynthesis.transcriptional activation.SRS... 0.02 OrthoFinder output from all 47 species
AT3G51060 SRS1, STY1 Lateral root primordium (LRP) protein-related 0.02 OrthoFinder output from all 47 species
AT5G12330 LRP1 Lateral root primordium (LRP) protein-related 0.03 OrthoFinder output from all 47 species
Adi_g045239 SRS7 SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058362 SHI SRS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g061023 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079599 SRS1, STY1 SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079607 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g085909 SRS1, STY1 SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16410 LRP1 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26536 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07658 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0062.g035174 SHI SRS-type transcription factor & original description: CDS=1-1092 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035783 SHI SRS-type transcription factor & original description: CDS=1-2148 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043005 SRS5 SRS-type transcription factor & original description: CDS=39-1118 0.03 OrthoFinder output from all 47 species
Ceric.14G028100.1 SRS1, STY1,... SRS-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.32G058400.1 SRS1, STY1,... SRS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g30563 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47477 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009812001 SRS5 RNA biosynthesis.transcriptional activation.SRS... 0.03 OrthoFinder output from all 47 species
GSVIVT01037267001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72490.1 LRP1, LOC_Os01g72490 transcription factor (SRS) 0.02 OrthoFinder output from all 47 species
LOC_Os05g32070.1 LRP1, LOC_Os05g32070 transcription factor (SRS) 0.04 OrthoFinder output from all 47 species
LOC_Os06g49830.1 SRS1, STY1,... transcription factor (SRS) 0.02 OrthoFinder output from all 47 species
LOC_Os08g43410.1 SRS1, STY1,... transcription factor (SRS) 0.02 OrthoFinder output from all 47 species
LOC_Os09g36160.1 SRS1, STY1,... transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Len_g31120 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_2299g0010 LRP1 transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Nbi_g26494 SHI SRS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g14706 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007215 SHI SRS-type transcription factor & original description: CDS=1-2160 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013968 SHI SRS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023316 SRS1, STY1 not classified & original description: CDS=12-590 0.03 OrthoFinder output from all 47 species
Solyc02g084680.3.1 SRS1, STY1,... transcription factor (SRS) 0.02 OrthoFinder output from all 47 species
Solyc11g064800.3.1 LRP1, Solyc11g064800 transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Spa_g50442 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29778 SRS1, STY1 SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30774 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004006_P001 SHI, Zm00001e004006 transcription factor (SRS) 0.02 OrthoFinder output from all 47 species
Zm00001e010227_P001 SRS1, STY1,... transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Zm00001e013256_P002 SHI, Zm00001e013256 transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Zm00001e026854_P001 SHI, Zm00001e026854 transcription factor (SRS) 0.03 OrthoFinder output from all 47 species
Zm00001e030189_P001 SHI, Zm00001e030189 transcription factor (SRS) 0.04 OrthoFinder output from all 47 species
Zm00001e034798_P001 SRS1, STY1,... transcription factor (SRS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!