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Aliases : SHI
Description : SRS-type transcription factor & original description: none
Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ppi_g16685 | |
| Cluster | HCCA: Cluster_235 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00063p00161200 | LRP1,... | RNA biosynthesis.transcriptional activation.SRS... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G51060 | SRS1, STY1 | Lateral root primordium (LRP) protein-related | 0.02 | OrthoFinder output from all 47 species | |
| AT5G12330 | LRP1 | Lateral root primordium (LRP) protein-related | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g045239 | SRS7 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g058362 | SHI | SRS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g061023 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g079599 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g079607 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g085909 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g106034 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g16410 | LRP1 | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g26536 | SHI | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07658 | SHI | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0062.g035174 | SHI | SRS-type transcription factor & original description: CDS=1-1092 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035783 | SHI | SRS-type transcription factor & original description: CDS=1-2148 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0092.g043005 | SRS5 | SRS-type transcription factor & original description: CDS=39-1118 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G028100.1 | SRS1, STY1,... | SRS-type transcription factor & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G058400.1 | SRS1, STY1,... | SRS-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g30563 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g47477 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01009812001 | SRS5 | RNA biosynthesis.transcriptional activation.SRS... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01037267001 | No alias | RNA biosynthesis.transcriptional activation.SRS... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g72490.1 | LRP1, LOC_Os01g72490 | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g32070.1 | LRP1, LOC_Os05g32070 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g49830.1 | SRS1, STY1,... | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g43410.1 | SRS1, STY1,... | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os09g36160.1 | SRS1, STY1,... | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g31120 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_2299g0010 | LRP1 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g26494 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g14706 | SHI | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007215 | SHI | SRS-type transcription factor & original description: CDS=1-2160 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0051.g013968 | SHI | SRS-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0150.g023316 | SRS1, STY1 | not classified & original description: CDS=12-590 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g084680.3.1 | SRS1, STY1,... | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g064800.3.1 | LRP1, Solyc11g064800 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g50442 | SHI | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g29778 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g30774 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e004006_P001 | SHI, Zm00001e004006 | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e010227_P001 | SRS1, STY1,... | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013256_P002 | SHI, Zm00001e013256 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026854_P001 | SHI, Zm00001e026854 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030189_P001 | SHI, Zm00001e030189 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e034798_P001 | SRS1, STY1,... | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | HCCA |
| MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| MF | GO:0008443 | phosphofructokinase activity | IEP | HCCA |
| BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |