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  5. Ppi_g16380

Ppi_g16380 (UBP13)


Aliases : UBP13

Description : deubiquitinase *(UBP12-13) & original description: none


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 UBP13,... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G11910 UBP13 ubiquitin-specific protease 13 0.04 OrthoFinder output from all 47 species
AT5G06600 UBP12 ubiquitin-specific protease 12 0.03 OrthoFinder output from all 47 species
Adi_g022452 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g060998 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076953 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109500 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21287 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16236 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19646 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05134 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g11910 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18908 UBP13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29323 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32969 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04496 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g20270 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0018.g014866 UBP12 deubiquitinase *(UBP12-13) & original description: CDS=40-3402 0.05 OrthoFinder output from all 47 species
Azfi_s0078.g038193 UBP12 deubiquitinase *(UBP12-13) & original description: CDS=241-3615 0.03 OrthoFinder output from all 47 species
Cba_g17070 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G025300.1 UBP13, Ceric.13G025300 deubiquitinase *(UBP12-13) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.14G040100.1 UBP12, Ceric.14G040100 deubiquitinase *(UBP12-13) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.24G037500.1 UBP12, Ceric.24G037500 deubiquitinase *(UBP12-13) & original description:... 0.09 OrthoFinder output from all 47 species
Cre07.g336200 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08947 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g46962 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50110 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g18754 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
GSVIVT01034603001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.07 OrthoFinder output from all 47 species
GSVIVT01037528001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
LOC_Os07g06950.1 UBP12, LOC_Os07g06950 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Len_g23299 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g05026 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40373 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10426331g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
MA_10427483g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
MA_32639g0010 UBP12 ubiquitin protease (USP7) 0.02 OrthoFinder output from all 47 species
Mp3g15430.1 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 OrthoFinder output from all 47 species
Msp_g43590 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28804 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g40484 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48499 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g18625 No alias deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Smo444302 UBP12 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
Solyc05g055090.4.1 UBP12, Solyc05g055090 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Solyc10g081610.2.1 UBP12, Solyc10g081610 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
Solyc11g006320.2.1 UBP12, Solyc11g006320 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Solyc11g071700.2.1 UBP12, Solyc11g071700 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Spa_g29818 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017788_P001 UBP12, Zm00001e017788 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 OrthoFinder output from all 47 species
Zm00001e019687_P003 UBP13, Zm00001e019687 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Zm00001e032871_P004 UBP12, Zm00001e032871 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Zm00001e039540_P003 UBP12, Zm00001e039540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR024729 USP7_ICP0-binding_dom 621 874
IPR001394 Peptidase_C19_UCH 196 517
IPR002083 MATH/TRAF_dom 58 178
IPR029346 USP_C 884 1093
No external refs found!