Ppi_g16083


Description : SSU processome assembly factor *(UTP6) & original description: none


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16083

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.02 OrthoFinder output from all 47 species
Zm00001e011580_P001 Zm00001e011580 SSU processome assembly factor (UTP6) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR013949 Utp6 9 82
No external refs found!