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  5. Ppi_g13886

Ppi_g13886 (QRT3)


Aliases : QRT3

Description : polygalacturonase *(QRT3) & original description: none


Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g13886
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aop_g67503 QRT3 polygalacturonase *(QRT3) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0006.g010377 QRT3 polygalacturonase *(QRT3) & original description: CDS=62-1624 0.03 OrthoFinder output from all 47 species
Ceric.15G061400.1 QRT3, Ceric.15G061400 polygalacturonase *(QRT3) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g16097 QRT3 polygalacturonase *(QRT3) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g31759 QRT3 polygalacturonase *(QRT3) & original description: none 0.11 OrthoFinder output from all 47 species
GSVIVT01012139001 QRT3 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os04g52320.1 QRT3, LOC_Os04g52320 polygalacturonase (QRT3) 0.02 OrthoFinder output from all 47 species
Len_g58007 QRT3 polygalacturonase *(QRT3) & original description: none 0.07 OrthoFinder output from all 47 species
Len_g58008 QRT3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44003 QRT3 polygalacturonase *(QRT3) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g29972 QRT3 polygalacturonase *(QRT3) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g26325 QRT3 polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g068400.3.1 QRT3, Solyc02g068400 polygalacturonase (QRT3) 0.06 OrthoFinder output from all 47 species
Spa_g33866 QRT3 polygalacturonase *(QRT3) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g43106 QRT3 polygalacturonase *(QRT3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44469 QRT3 polygalacturonase *(QRT3) & original description: none 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!