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  5. Ppi_g12013

Ppi_g12013


Description : component *(eS25) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g12013

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00198170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Adi_g007622 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g042161 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g55477 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_29693 No alias component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_104137g0010 No alias component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10430279g0010 No alias component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
Pnu_g15384 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_13580V3.1 Pp3c14_13580 Ribosomal protein S25 family protein 0.01 OrthoFinder output from all 47 species
Pp3c17_4670V3.1 Pp3c17_4670 Ribosomal protein S25 family protein 0.01 OrthoFinder output from all 47 species
Pp3c1_25330V3.1 Pp3c1_25330 Ribosomal protein S25 family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017022 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo172404 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Tin_g04858 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e019589_P001 Zm00001e019589 component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 6 105
No external refs found!