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  5. Ppi_g11339

Ppi_g11339


Description : SMARCI component *(BRD) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g11339
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
Als_g08054 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Aop_g08781 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.20G005700.1 Ceric.20G005700 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.29G070400.1 Ceric.29G070400 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.150 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g09954 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
LOC_Os03g03870.1 LOC_Os03g03870 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g19175 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Mp3g15940.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g41800 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ore_g17328 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g15318 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003124 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015144 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sam_g26218 No alias transcriptional repressor *(AITR) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g051210.3.1 Solyc06g051210 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc07g064700.4.1 Solyc07g064700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g36090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0072546 EMC complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 290 371
No external refs found!