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  5. Ppi_g11325

Ppi_g11325 (SMG7)


Aliases : SMG7

Description : not classified & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g11325

Target Alias Description ECC score Gene Family Method Actions
Adi_g055840 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Als_g23897 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23456.t1 SMG7, Aspi01Gene23456 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Gb_21699 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Len_g48171 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g06259 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
MA_10435713g0020 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
MA_32980g0010 SMG7 Protein SMG7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36629 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ore_g43522 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Pir_g10953 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003478 SMG7 not classified & original description: CDS=237-2600 0.03 OrthoFinder output from all 47 species
Smo410159 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1-like_N 63 190
IPR018834 DNA/RNA-bd_Est1-type 203 506
No external refs found!