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  5. Ppi_g10325

Ppi_g10325 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g10325
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT2G29140 PUM3, APUM3 pumilio 3 0.02 OrthoFinder output from all 47 species
AT4G25880 APUM6, PUM6 pumilio 6 0.03 OrthoFinder output from all 47 species
Adi_g021619 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g37314 APUM6, PUM6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61420.t1 PUM1, APUM1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0350.g066551 PUM3, APUM3 not classified & original description: CDS=36-2801 0.03 OrthoFinder output from all 47 species
Cre17.g746647 APUM6, PUM6 Pumilio homolog 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g04722 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21556 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g008490.3.1 APUM4, PUM4,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 339 709
IPR001313 Pumilio_RNA-bd_rpt 859 894
IPR001313 Pumilio_RNA-bd_rpt 932 965
IPR001313 Pumilio_RNA-bd_rpt 978 1007
IPR001313 Pumilio_RNA-bd_rpt 715 749
IPR001313 Pumilio_RNA-bd_rpt 787 820
IPR001313 Pumilio_RNA-bd_rpt 897 927
IPR001313 Pumilio_RNA-bd_rpt 751 784
IPR001313 Pumilio_RNA-bd_rpt 829 853
No external refs found!