LOC_Os10g41790.1


Description : nMAT1/2 type-I mitochondrial RNA splicing factor


Gene families : OG_01_0004888 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004888_tree ,
OG_02_0003570 (LandPlants) Phylogenetic Tree(s): OG_02_0003570_tree ,
OG_03_0003926 (SeedPlants) Phylogenetic Tree(s): OG_03_0003926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41790.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00096p00172010 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.04 Archaeplastida
LOC_Os12g21870.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
MA_52319g0030 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
Pp3c26_11300V3.1 No alias Intron maturase, type II family protein 0.02 Archaeplastida
Solyc01g112025.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 Archaeplastida
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.1 Archaeplastida
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 LandPlants
AMTR_s00096p00172010 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 LandPlants
AMTR_s00110p00142760 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 LandPlants
AT1G30010 No alias Intron maturase, type II family protein 0.02 LandPlants
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.04 LandPlants
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 LandPlants
LOC_Os12g21870.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 LandPlants
MA_52319g0030 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 LandPlants
Pp3c26_11300V3.1 No alias Intron maturase, type II family protein 0.02 LandPlants
Solyc01g112025.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.09 LandPlants
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 LandPlants
AMTR_s00002p00133420 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 SeedPlants
AMTR_s00002p00133480 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 SeedPlants
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 SeedPlants
AMTR_s00096p00172010 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 SeedPlants
AMTR_s00110p00142760 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 SeedPlants
AT1G30010 No alias Intron maturase, type II family protein 0.02 SeedPlants
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.02 SeedPlants
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 SeedPlants
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
LOC_Os12g21870.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
MA_52319g0030 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 SeedPlants
Solyc01g112025.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 SeedPlants
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.08 SeedPlants
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR024937 Domain_X 490 584
No external refs found!