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  5. Ppi_g09359

Ppi_g09359


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g09359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00025p00230510 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Aev_g01587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015912 No alias not classified & original description: CDS=1-2058 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.03 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.04 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000786.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g19268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10425930g0020 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g22351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20526 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_19726V3.1 Pp3c17_19726 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016669 No alias not classified & original description: CDS=25-1776 0.03 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo173775 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo437743 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g02897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11545 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 840 921
IPR007502 Helicase-assoc_dom 682 767
IPR011545 DEAD/DEAH_box_helicase_dom 236 387
IPR001650 Helicase_C 490 618
No external refs found!