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  5. Ppi_g08891

Ppi_g08891


Description : E3 ubiquitin ligase *(PIR) & original description: none


Gene families : OG0001288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g08891

Target Alias Description ECC score Gene Family Method Actions
AT1G03365 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g084041 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06718 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37782 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03269 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07306 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17238 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14097 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001865 No alias E3 ubiquitin ligase *(PIR) & original description: CDS=1-2784 0.03 OrthoFinder output from all 47 species
Smo437462 No alias MND1-interacting protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Spa_g12624 No alias E3 ubiquitin ligase *(PIR) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046527 PIR2-like_helical 154 257
No external refs found!