Ppi_g08865

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g08865
Cluster	HCCA: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00023120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT3G09630	No alias	Ribosomal protein L4/L1 family	0.04	OrthoFinder output from all 47 species
AT5G02870	No alias	Ribosomal protein L4/L1 family	0.07	OrthoFinder output from all 47 species
Aop_g12528	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.07G041200.1	Ceric.07G041200	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.18G033500.1	Ceric.18G033500	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre09.g397697	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from all 47 species
Dcu_g25869	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
LOC_Os03g58204.1	LOC_Os03g58204	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os07g08330.1	LOC_Os07g08330	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Lfl_g29160	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Msp_g01521	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g16964	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g32222	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008375	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13132	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g25486	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Solyc10g084350.2.1	Solyc10g084350	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g04220	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g36614	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g43372	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g14297	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	275	344
IPR002136	Ribosomal_L4/L1e	21	262

External Links

No external refs found!

Ppi_g08865

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation